
A Review of Expansion Microscopy
- 1 College of Arts and Sciences, University of Washington-Seattle, Seattle, WA, 98105, USA
* Author to whom correspondence should be addressed.
Abstract
Expansion microscopy is a type of powerful and simple super-resolution microscopy that provides sub-diffraction images of biological samples by physically expanding them anchored in hydrogels. It has been combined with other existing methods to better visualize the microscopic structures of the samples. We will review some very important papers in this area about the early developments and explorations of general procedures and fundamental mechanisms of expansion microscopy. We will also review the recent developments and applications as well as their advantages and insufficiencies. Through our review, it is clear that the current expansion microscopy applications can help researchers to identify many sub-diffraction structures of the samples with many different fluorescence staining strategies, but there is a tradeoff between those strategies. Based on these points, we anticipate expansion microscopy will achieve a higher expansion factor and more powerful staining techniques.
Keywords
imaging, fluorescence staining, expansion microscopy, expansion factor
[1]. Lee, S., Li, L., Ben-Aryeh, Y., Wang, Z., & Guo, W. (2013). Overcoming the diffraction limit induced by microsphere optical nanoscopy. Journal of Optics., 15(12). https://doi.org/10.1088%2F2040-8978%2F15%2F12%2F125710
[2]. WILDANGER, D., MEDDA, R., KASTRUP, L., & HELL, S. (2009). compact STED microscope providing 3D nanoscale resolution. Journal of Microscopy (Oxford), 236(1), 35–43. https://doi.org/10.1111/j.1365-2818.2009.03188.x
[3]. Chen, F., Tillberg, P. W., & Boyden, E. S. (2015). Expansion microscopy. Science, 347(6221), 543–548. https://doi.org/10.1126/science.1260088
[4]. Gambarotto, D., Zwettler, F. U., Le Guennec, M., Schmidt-Cernohorska, M., Fortun, D., Borgers, S., Heine, J., Schloetel, J.-G., Reuss, M., Unser, M., Boyden, E. S., Sauer, M., Hamel, V., & Guichard, P. (2019). Imaging cellular ultrastructures using expansion microscopy (U-ExM). Nature Methods, 16(1), 71–74. https://doi.org/10.1038/s41592-018-0238-1
[5]. Min, K., Cho, I., Choi, M., & Chang, J.-B. (2020). Multiplexed expansion microscopy of the brain through fluorophore screening. Methods (San Diego, Calif.), 174, 3–10. https://doi.org/10.1016/j.ymeth.2019.07.017
[6]. Hu, Y., Chu, X., Chen, T., Pan, Q., Liu, C., Yi, J., & Chu, X. (2020). Improving resolving ability of expansion microscopy by varying crosslinker concentration. Chemical Communications (Cambridge, England), 56(3), 4176–4179. https://doi.org/10.1039/d0cc00052c
[7]. Truckenbrodt, S., Maidorn, M., Crzan, D., Wildhagen, H., Kabatas, S., & Rizzoli, S. O. (2018). X10 expansion microscopy enables 25‐nm resolution on conventional microscopes. EMBO Reports, 19(9). https://doi.org/10.15252/embr.201845836
[8]. Ku, T., Swaney, J., Park, J.-Y., Albanese, A., Murray, E., Cho, J. H., Park, Y.-G., Mangena, V., Chen, J., & Chung, K. (2016). Multiplexed and scalable super-resolution imaging of three-dimensional protein localization in size-adjustable tissues. Nature Biotechnology, 34(9), 973–981. https://doi.org/10.1038/nbt.3641
[9]. Damstra, H. G. J., Mohar, B., Eddison, M., Akhmanova, A., Kapitein, L. C., & Tillberg, P. W. (2022). Visualizing cellular and tissue ultrastructure using Ten-fold Robust Expansion Microscopy (TREx). eLife, 11. https://doi.org/10.7554/eLife.73775
[10]. Raj, A., Tyagi, S., van den Bogaard, P., Rifkin, S. A., & van Oudenaarden, A. (2008). Imaging individual mRNA molecules using multiple singly labeled probes. Nature Methods, 5(10), 877–879. https://doi.org/10.1038/nmeth.1253
[11]. Halpern, A. R., Alas, G. C. M., Chozinski, T. J., Paredez, A. R., & Vaughan, J. C. (2017). Hybrid Structured Illumination Expansion Microscopy Reveals Microbial Cytoskeleton Organization. ACS Nano, 11(12), 12677–12686. https://doi.org/10.1021/acsnano.7b07200
[12]. Mao, C., Lee, M. Y., Jhan, J.-R., Halpern, A. R., Woodworth, M. A., Glaser, A. K., Chozinski, T. J., Shin, L., Pippin, J. W., Shankland, S. J., Liu, J. T. C., & Vaughan, J. C. (2020). Feature-rich covalent stains for super-resolution and cleared tissue fluorescence microscopy. Science Advances, 6(22), eaba4542–eaba4542. https://doi.org/10.1126/sciadv.aba4542
[13]. Cho, I., & Chang, J.-B. (2022). Simultaneous expansion microscopy imaging of proteins and mRNAs via dual-ExM. Scientific Reports, 12(1), 3360–3360. https://doi.org/10.1038/s41598-022-06903-3
[14]. Shi, L., Klimas, A., Gallagher, B., Cheng, Z., Fu, F., Wijesekara, P., Miao, Y., Ren, X., Zhao, Y., & Min, W. (2022). Super‐Resolution Vibrational Imaging Using Expansion Stimulated Raman Scattering Microscopy. Advanced Science, 9(20), e2200315–n/a. https://doi.org/10.1002/advs.202200315
[15]. Gao, M., Maraspini, R., Beutel, O., Zehtabian, A., Eickholt, B., Honigmann, A., & Ewers, H. (2018). Expansion Stimulated Emission Depletion Microscopy (ExSTED). ACS Nano, 12(5), 4178–4185. https://doi.org/10.1021/acsnano.8b00776
Cite this article
Liu,T. (2023). A Review of Expansion Microscopy. Theoretical and Natural Science,4,645-649.
Data availability
The datasets used and/or analyzed during the current study will be available from the authors upon reasonable request.
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Volume title: Proceedings of the 2nd International Conference on Biological Engineering and Medical Science (ICBioMed 2022), Part II
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